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Human kidney cortex cells

Accession number BBBC051 · Version 1

Example images
 

BBBC051_Example Image 1 BBBC051_Example Image 2 BBBC051_Example Image 3 BBBC051_Example Image 4

Biological application

The dataset was designed to train a classification algorithm to correctly identify cell types in the human kidney cortex. 

Images

Confocal single channel images of DAPI fluorescence cropped from tissue sections. Images datasets are 1) slices, 2) projections and 3) volumes. Additional details on generation is the subject of an upcoming publication.​

Images.zip (2.9 GB)

Ground truth  Biological labels button B

Data is organized by 3 tissue samples. Subfolders contain the relevant images for each cell class in the corresponding tissue. Each cell class has images containing image volumes or projections.

groundtruthlabels.txt

Published results using this image set

Woloshuk, A, Khochare, S, Almulhim, AF, et al. In Situ Classification of Cell Types in Human Kidney Tissue Using 3D Nuclear Staining. Cytometry. 2020; 1– 15. https://doi.org/10.1002/cyto.a.24274

For more information

The image set was generated by the Ashkar Lab at Indiana University School of Medicine, Indianapolis, Indiana. Please contact Andre Woloshuk regarding this dataset.

Recommended citation

"We used image set BBBC051, available from the Broad Bioimage Benchmark Collection [Ljosa et al., Nature Methods, 2012]." 

Copyright

Creative Commons Attribution 3.0 Unported License The images and ground truth are licensed under a Creative Commons Attribution 3.0 Unported License (Commercial use allowed) by Andre Woloshuk.