Image Sets

Identification and segmentation

Accession Description Mode Fields per Sample Total Fields Total Images Ground Truth
BBBC001 Human HT29 colon-cancer cells Fluorescent 6 6 6
BBBC002 Drosophila Kc167 cells Fluorescent 5 50 50
BBBC003 Mouse embryos DIC 15 15 15  
BBBC004 Synthetic cells Fluorescent 20 100 100  
BBBC005 Synthetic cells Fluorescent 25 9,600 19,200  
BBBC006 Human U2OS cells (out of focus) Fluorescent 2 768 52,224  
BBBC007 Drosophila Kc167 cells Fluorescent 16 16 32
BBBC008 Human HT29 colon-cancer cells Fluorescent 6 12 24
BBBC009 Human red blood cells DIC 5 5 5
BBBC010 C. elegans live/dead assay (uneven illumination) Bright field and fluorescent 50 100 200    
BBBC018 Human HT29 colon-cancer cells (diverse phenotypes) Fluorescent 4 56 168
BBBC019 Collective cell migration DIC 6-54 171 171
BBBC020 Murine bone-marrow derived macrophages Fluorescent 25 25 75
BBBC024 3D HL60 Cell Line (synthetic data) Fluorescent 30 120 240  
BBBC025 Human U2OS cells – RNAi Cell Painting experiment Fluorescent 9 27,648 138,240
BBBC026 Human Hepatocyte and Murine Fibroblast cells – Co-culture experiment Fluorescent 9 864 864  
BBBC027 3D Colon Tissue (synthetic data) Fluorescent 10 30 60  
BBBC028 Polymerized structures DIC 10 60 60
BBBC029 Synthetic DIC Images DIC 1-12 109 218
BBBC030 Chinese Hamster Ovary Cells DIC 60 60 60
BBBC032 Mouse embryo blastocyst cells Fluorescent 1 1 4
BBBC033 Mouse trophoblast stem cells Fluorescent 1 1 2
BBBC034 Induced pluripotent human stem cells Bright field and fluorescent

3

 3 9
BBBC035 Simulated HL60 cells (from the Cell Tracking Challenge) Fluorescent 2 2 230
BBBC038 Kaggle 2018 Data Science Bowl Fluorescent 1 670 670
BBBC039 Nuclei of U2OS cells in a chemical screen Fluorescent 1 200 200      
BBBC041 P. vivax (malaria) infected human blood smears Bright field 1,328 1,328 1,328    
BBBC042 Rat astrocyte cells Bright field 1,120 1,120 1,120
BBBC044 Mouse hippocampal presynaptic terminals (vGlut-1 and vGat) Fluorescent 6 6 12
BBBC045 Human White Blood Cells Bright field 26-30 146 146
BBBC046 FiloData3D - Single A549 cells with filopodia (synthetic image data) Fluorescent 3 48 1,440  
BBBC050 Nuclei of mouse embryonic cells Fluorescent 4-11 15 165  

 

Phenotype classification

Accession Description Mode Fields per sample Total Fields Total Images Ground truth
BBBC010 C. elegans live/dead assay Bright field and fluorescent 50 100 200    
BBBC011 C. elegans metabolism assay Bright field and fluorescent 21-29 50 50
BBBC012 C. elegans infection marker Bright field and fluorescent 48-72 120 360
BBBC013 Human U2OS cells cytoplasm–nucleus translocation Fluorescent 4-8 96 192
BBBC014 Human MCF7 and A549 cells cytoplasm–nucleus translocation Fluorescent 4 96 192
BBBC015 Human U2OS cells transfluor Fluorescent 12 144 288
BBBC016 Human U2OS cells transfluor Fluorescent 3-9 72 144
BBBC031 Simulated 24-well plate with synthetic cells Fluorescent 9 216 216    
BBBC041 P. vivax (malaria) infected human blood smears Bright field 1,328 1,328 1,328
BBBC048 Cell Cycle Jurkat Cells Bright field and fluorescent 15-14333 32,266 129,064
BBBC051 Human kidney cortex cells Fluorescent 690,000 690,00 690,000
BBBC052 Murine Cath.a differentiated (CAD) cells Fluorescent 25-41 309 309
BBBC053 Murine Cath.a differentiated (CAD) cells Fluorescent 29-30 59 59
BBBC054 LPS activated immortalized mouse migroglia (IMG) Bright field 3 180 180  

 

Image-based Profiling

Accession Description Mode Fields per sample Total Fields Total Images Ground truth
BBBC017 Human HT29 colon-cancer cells shRNAi screen Fluorescent 6 64,512 193,536  
BBBC021 Human MCF7 cells – compound-profiling experiment Fluorescent 4 13,200 39,600
BBBC022 Human U2OS cells – compound-profiling Cell Painting experiment Fluorescent 9 69,120 345,600
BBBC036 Human U2OS Cells – profiling bioactive compounds using Cell Painting Fluorescent 9 988,994 4,944,970
BBBC037 Human U2OS cells – Gene overexpression profiling experiment Fluorescent 9 20,736 103,680
BBBC047 A dataset of images and morphological profiles of 30,000 small-molecule treatments using the Cell Painting assay Fluorescent 6 951,552 4,757,760