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Image Sets

Identification and segmentation

Accession Description Mode Fields Ground Truth
BBBC001 Human HT29 colon-cancer cells Fluorescent 6 Counts button C
BBBC002 Drosophila Kc167 cells Fluorescent 50 Counts button C
BBBC003 Mouse embryos DIC 15 Counts button CForeground background button F
BBBC004 Synthetic cells Fluorescent 100 Counts button CForeground background button F
BBBC005 Synthetic cells Fluorescent 19,200 Counts button CForeground background button F
BBBC006 Human U2OS cells (out of focus) Fluorescent 52,224 Foreground background button FOutlines button O
BBBC007 Drosophila Kc167 cells Fluorescent 16 Outlines button O
BBBC008 Human HT29 colon-cancer cells Fluorescent 12 Foreground background button F
BBBC009 Human red blood cells DIC 5 Outlines button O
BBBC010 C. elegans live/dead assay (uneven illumination) Bright field and fluorescent 384 Foreground background button FOutlines button OBiological labels button B
BBBC018 Human HT29 colon-cancer cells (diverse phenotypes) Fluorescent 55 Outlines button O
BBBC019 Collective cell migration DIC 126 Foreground background button F
BBBC020 Murine bone-marrow derived macrophages Fluorescent 20 Outlines button O
BBBC024 3D HL60 Cell Line (synthetic data) Fluorescent 120 Foreground background button FCounts button C
BBBC025 Human U2OS cells – RNAi Cell Painting experiment Fluorescent 27,648 Biological labels button B
BBBC026 Human Hepatocyte and Murine Fibroblast cells – Co-culture experiment Fluorescent 864 Biological labels button BCounts button C
BBBC027 3D Colon Tissue (synthetic data) Fluorescent 60 Foreground background button FCounts button C
BBBC028 Polymerized structures DIC 60 Foreground background button F
BBBC029 Synthetic DIC Images DIC 218 Foreground background button F
BBBC030 Chinese Hamster Ovary Cells DIC 60 Outlines button O
BBBC032 Mouse embryo blastocyst cells Fluorescent 1 Foreground background button F
BBBC033 Mouse trophoblast stem cells Fluorescent 1 Foreground background button F
BBBC034 Induced pluripotent human stem cells Bright field and fluorescent 2 Foreground background button F
BBBC035 Simulated HL60 cells (from the Cell Tracking Challenge) Fluorescent 2 Foreground background button F
BBBC038 Kaggle 2018 Data Science Bowl Fluorescent 735 Foreground background button F
BBBC039 Nuclei of U2OS cells in a chemical screen Fluorescent 200 Foreground background button FBiological labels button BOutlines button OCounts button C
BBBC041 P. vivax (malaria) infected human blood smears Bright field 1364 Counts button CBiological labels button B BUTTON U
BBBC042 Rat astrocyte cells Bright field 1200 Biological labels button B
BBBC044 Mouse hippocampal presynaptic terminals (vGlut-1 and vGat) Fluorescent 180 Counts button C
BBBC045 Human White Blood Cells Bright field 1 Biological labels button B
BBBC046 FiloData3D - Single A549 cells with filopodia (synthetic image data) Fluorescent 9 Counts button CForeground background button F
BBBC050 Nuclei of mouse embryonic cells Fluorescent 1 Counts button CForeground background button F

 

Phenotype classification

Accession Description Mode Fields Ground truth
BBBC010 C. elegans live/dead assay Bright field and fluorescent 384 Foreground background button FOutlines button OBiological labels button B
BBBC011 C. elegans metabolism assay Bright field and fluorescent 50 Biological labels button B
BBBC012 C. elegans infection marker Bright field and fluorescent 120 Biological labels button B
BBBC013 Human U2OS cells cytoplasm–nucleus translocation Fluorescent 96 Biological labels button B
BBBC014 Human U2OS cells cytoplasm–nucleus translocation Fluorescent 96 Biological labels button B
BBBC015 Human U2OS cells transfluor Fluorescent 144 Biological labels button B
BBBC016 Human U2OS cells transfluor Fluorescent 144 Biological labels button B
BBBC031 Simulated 24-well plate with synthetic cells Fluorescent 216 Counts button CL button locationBiological labels button B
BBBC041 P. vivax (malaria) infected human blood smears Bright field 1364 Counts button C
BBBC048 Cell Cycle Jurkat Cells Bright field and fluorescent   Biological labels button B
BBBC051 Human kidney cortex cells Fluorescent 690000 Biological labels button B
BBBC052 Murine Cath.a differentiated (CAD) cells Fluorescent 1 Biological labels button B
BBBC053 Murine Cath.a differentiated (CAD) cells Fluorescent 1 Biological labels button B
BBBC054 LPS activated immortalized mouse migroglia (IMG) Bright Field 60 Biological labels button BL button location

 

Complete high-throughput experiments without ground truth

Accession Description Mode Fields Ground truth
BBBC017 Human HT29 colon-cancer cells shRNAi screen Fluorescent 64,512  
BBBC022 Human U2OS cells – compound-profiling Cell Painting experiment Fluorescent 69,120 Biological labels button B

 

Image-based Profiling

Accession Description Mode Fields Ground truth
BBBC021 Human MCF7 cells – compound-profiling experiment Fluorescent 13,200 Biological labels button B
BBBC036 Human U2OS Cells – profiling bioactive compounds using Cell Painting Fluorescent 6 Biological labels button B
BBBC037 Human U2OS cells – Gene overexpression profiling experiment Fluorescent 9 Biological labels button B
BBBC047 A dataset of images and morphological profiles of 30,000 small-molecule treatments using the Cell Painting assay Fluorescent 6 Biological labels button B