Image Sets

Identification and segmentation

Accession Description Mode Fields Ground Truth
BBBC001 Human HT29 colon-cancer cells Fluorescent 6
BBBC002 Drosophila Kc167 cells Fluorescent 50
BBBC003 Mouse embryos DIC 15  
 BBBC004 Synthetic cells Fluorescent 100  
BBBC005 Synthetic cells Fluorescent 19,200  
 BBBC006 Human U2OS cells (out of focus) Fluorescent 52,224  
BBBC007 Drosophila Kc167 cells Fluorescent 16
BBBC008 Human HT29 colon-cancer cells Fluorescent 12
BBBC009 Human red blood cells DIC 5
BBBC010 C. elegans live/dead assay (uneven illumination) Bright field and fluorescent 384    
 BBBC018 Human HT29 colon-cancer cells (diverse phenotypes) Fluorescent 55
BBBC019 Collective cell migration DIC 126
BBBC020 Murine bone-marrow derived macrophages Fluorescent 20
BBBC024 3D HL60 Cell Line (synthetic data) Fluorescent 120  
 BBBC025 Human U2OS cells – RNAi Cell Painting experiment Fluorescent 27,648
BBBC026 Human Hepatocyte and Murine Fibroblast cells – Co-culture experiment Fluorescent 864  
BBBC027 3D Colon Tissue (synthetic data) Fluorescent 60  
BBBC028 Polymerized structures DIC 60
BBBC029 Synthetic DIC Images DIC 218
BBBC030 Chinese Hamster Ovary Cells DIC 60
BBBC032 Mouse embryo blastocyst cells Fluorescent 1
BBBC033 Mouse trophoblast stem cells Fluorescent 1
BBBC034 Induced pluripotent human stem cells Bright field and fluorescent 2
BBBC035 Simulated HL60 cells (from the Cell Tracking Challenge) Fluorescent 2
BBBC038 Kaggle 2018 Data Science Bowl Fluorescent 735
BBBC039 Nuclei of U2OS cells in a chemical screen Fluorescent 200      
  BBBC041 P. vivax (malaria) infected human blood smears Bright field 1364    
BBBC042 Rat astrocyte cells Bright field 1200
BBBC044 Mouse hippocampal presynaptic terminals (vGlut-1 and vGat) Fluorescent 180
BBBC045 Human White Blood Cells Bright field 1
BBBC046 FiloData3D - Single A549 cells with filopodia (synthetic image data) Fluorescent 9  
BBBC050 Nuclei of mouse embryonic cells Fluorescent 1  

 

Phenotype classification

Accession Description Mode Fields Ground truth
BBBC010 C. elegans live/dead assay Bright field and fluorescent 384    
BBBC011 C. elegans metabolism assay Bright field and fluorescent 50
BBBC012 C. elegans infection marker Bright field and fluorescent 120
BBBC013 Human U2OS cells cytoplasm–nucleus translocation Fluorescent 96
BBBC014 Human U2OS cells cytoplasm–nucleus translocation Fluorescent 96
BBBC015 Human U2OS cells transfluor Fluorescent 144
BBBC016 Human U2OS cells transfluor Fluorescent 144
BBBC031 Simulated 24-well plate with synthetic cells Fluorescent 216    
B BBC041 P. vivax (malaria) infected human blood smears Bright field 1364
BBBC048 Cell Cycle Jurkat Cells Bright field and fluorescent  
BBBC051 Human kidney cortex cells Fluorescent 690000
BBBC052 Murine Cath.a differentiated (CAD) cells Fluorescent 1
BBBC053 Murine Cath.a differentiated (CAD) cells Fluorescent 1
BBBC054 LPS activated immortalized mouse migroglia (IMG) Bright Field 60  

 

Complete high-throughput experiments without ground truth

Accession Description Mode Fields Ground truth
BBBC017 Human HT29 colon-cancer cells shRNAi screen Fluorescent 64,512  
BBBC022 Human U2OS cells – compound-profiling Cell Painting experiment Fluorescent 69,120

 

Image-based Profiling

Accession Description Mode Fields Ground truth
BBBC021 Human MCF7 cells – compound-profiling experiment Fluorescent 13,200
BBBC036 Human U2OS Cells – profiling bioactive compounds using Cell Painting Fluorescent 6
BBBC037 Human U2OS cells – Gene overexpression profiling experiment Fluorescent 9
BBBC047 A dataset of images and morphological profiles of 30,000 small-molecule treatments using the Cell Painting assay Fluorescent 6